Package: scperturbR 0.1.0

scperturbR: E-Statistics for Seurat Objects

R version of 'scperturb' tool for single-cell perturbation analysis. Contains wrappers for performing E-statistics for Seurat objects. More details on the method can be found in Peidli et al. (2023) <doi:10.1101/2022.08.20.504663> and in Székely and Rizzo (2004).

Authors:Stefan Peidli

scperturbR_0.1.0.tar.gz
scperturbR_0.1.0.zip(r-4.7)scperturbR_0.1.0.zip(r-4.6)scperturbR_0.1.0.zip(r-4.5)
scperturbR_0.1.0.tgz(r-4.6-any)scperturbR_0.1.0.tgz(r-4.5-any)
scperturbR_0.1.0.tar.gz(r-4.7-any)scperturbR_0.1.0.tar.gz(r-4.6-any)
scperturbR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scperturbR/json (API)
NEWS

# Install 'scperturbR' in R:
install.packages('scperturbR', repos = c('https://stefanpeidli.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sanderlab/scperturb/issues

On CRAN:

Conda:

1.00 score 8 scripts 219 downloads 2 exports 146 dependencies

Last updated from:825f4cebc3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK276
source / vignettesOK365
linux-release-x86_64OK274
macos-release-arm64OK269
macos-oldrel-arm64OK230
windows-develOK196
windows-releaseOK210
windows-oldrelOK205
wasm-releaseOK165

Exports:edistetest

Dependencies:abindaskpassbase64encBHbitopsbootbslibcachemcaToolscliclustercodetoolscommonmarkcowplotcpp11crosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngenergyevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragslgtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemimeminiUInlmeopensslotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLrdistreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS7sassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo