Package: scperturbR 0.1.0

scperturbR: E-Statistics for Seurat Objects

R version of 'scperturb' tool for single-cell perturbation analysis. Contains wrappers for performing E-statistics for Seurat objects. More details on the method can be found in Peidli et al. (2023) <doi:10.1101/2022.08.20.504663> and in Székely and Rizzo (2004).

Authors:Stefan Peidli

scperturbR_0.1.0.tar.gz
scperturbR_0.1.0.zip(r-4.5)scperturbR_0.1.0.zip(r-4.4)scperturbR_0.1.0.zip(r-4.3)
scperturbR_0.1.0.tgz(r-4.5-any)scperturbR_0.1.0.tgz(r-4.4-any)scperturbR_0.1.0.tgz(r-4.3-any)
scperturbR_0.1.0.tar.gz(r-4.5-noble)scperturbR_0.1.0.tar.gz(r-4.4-noble)
scperturbR_0.1.0.tgz(r-4.4-emscripten)
scperturbR.pdf |scperturbR.html✨
scperturbR/json (API)
NEWS

# Install 'scperturbR' in R:
install.packages('scperturbR', repos = c('https://stefanpeidli.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sanderlab/scperturb/issues

On CRAN:

Conda:

1.00 score 7 scripts 152 downloads 2 exports 150 dependencies

Last updated 2 years agofrom:825f4cebc3. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 16 2025
R-4.5-winOKMar 16 2025
R-4.5-macOKMar 16 2025
R-4.5-linuxOKMar 16 2025
R-4.4-winOKMar 16 2025
R-4.4-macOKMar 16 2025
R-4.4-linuxOKMar 16 2025
R-4.3-winOKMar 16 2025
R-4.3-macOKMar 16 2025

Exports:edistetest

Dependencies:abindaskpassbase64encBHbitopsbootbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngenergyevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragslgtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLrdistreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsnesassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo